API reference

Generated from the docstrings. The names exported by foambryo itself are listed in the package's __init__; the modules below hold them.

module	what
foambryo.io	dcel_mesh_from_segmentation_mask, dcel_mesh_from_file, reconstruct_mask
foambryo.dcel	DcelData: vertices, triangles, labels, crop faces, cut cells
foambryo.tension_inference	infer_tensions and its variants, TensionComputationMethod
foambryo.pressure_inference	infer_pressures, PressureComputationMethod
foambryo.force_inference	infer_forces, infer_tensions_then_pressures
foambryo.seed_ensembles	infer_tensions_over_seeds
foambryo.crop_faces	crop faces, cut cells and their warnings
foambryo.linear_solves	solver, SolveDiagnostics, save_solve_diagnostics
foambryo.junction_graph	components, undetermined interfaces, the exact normalisation
foambryo.uncertainty	infer_tensions_with_uncertainty, compute_inference_diagnostics
foambryo.second_order_angle_reading	angle_reading
foambryo.wedge_refusal	refusal, WedgeRefusal, refusal_report
foambryo.per_edge_tension_inference	YoungDupreLocal
foambryo.force_balance_inference	ForceBalance*, infer_force_balance
foambryo.reconstruction_cost	the time and memory estimate
foambryo.segmentation_masks	reading and checking masks, the mask report
foambryo.results	the tables and the run record of the command
foambryo.colour_scales	the viewers' colours
foambryo.viewing	plot_force_inference, view_mask, save_colour_bars
foambryo.geometry	areas, volumes, angles and their derivatives
foambryo.curvature	mean and Gaussian curvatures
foambryo.validation	mesh integrity and force-balance checks